How this usually works
Good payroll services for freelancers begin with a quick scoping call and a light review of your structure, software and people. The aim is to identify who is paid, how often, and which obligations apply (STP, super, awards, workers comp, payroll tax thresholds).
From there the work typically runs in three phases:
- Setup and onboarding: Confirm registrations, add employees/contractors, set pay items, leave, super and bank details; connect a super clearing house; test STP.
- Run and reconcile: Process pay runs, lodge STP on or before payday, pay super by the due date, reconcile W1/W2 to your BAS/IAS.
- Year-end wrap: Reconcile totals, finalise STP, issue income statements in myGov, review changes to awards and super for the new year.
Notes by structure:
- Sole traders: You don’t payroll your own drawings. Payroll applies only to staff or contractors deemed employees for super.
- Companies/trusts: Owners are often paid wages or director fees through payroll. STP applies to all employees and closely held payees (with some concessions).
Australian context to keep in view
- PAYG withholding registration is needed before withholding from employees, directors and some contractor payments.
- Single Touch Payroll (STP Phase 2) must be lodged on or before each pay day via an STP-enabled system.
- Superannuation Guarantee is 11.5% from 1 July 2024. Super is generally due quarterly by the 28th of the following month. “Payday super” is planned to commence from 1 July 2026.
- Contractor vs employee: Contractors paid mainly for labour can be entitled to super even with an ABN (ATO SGR 2005/1). If a supplier doesn’t quote an ABN and no exemption applies, withhold 47%.
- Sole traders cannot pay themselves wages; companies and trusts generally do via payroll (including closely held payees).
- Report W1/W2 on BAS or IAS. Workers compensation/WorkCover and state payroll tax may apply depending on state and thresholds.
What to compare before you commit
Scope
Confirm setup, onboarding, awards mapping, super clearing house, pay runs, STP per pay, EOFY finalisation, and W1/W2 reconciliation are included.
Software fit
Look for confidence with your stack (e.g. Xero, MYOB, QuickBooks, Employment Hero, Deputy, Tanda) and clear workflow explanations, not just brand names.
Turnaround and communication
Agree pay calendars, approvals, backup support for urgent runs, and who resolves ATO or super clearing house errors.
Commercial fit
Compare fixed vs per-employee pricing, support hours, and whether you want payroll-only or integrated bookkeeping/BAS support.
What’s included in freelancer payroll services
- Registrations: PAYG withholding, super clearing house access.
- Payroll setup: pay items, tax scales, super categories, leave accruals, bank feeds for wages and super.
- Onboarding: TFN and super choice forms, right-to-work checks, award/Agreement mapping for casuals.
- Pay runs: timesheet imports, review and approvals, payslips issued on time.
- Super: SG calculation, clearing house lodgement, variance checks and rectifications.
- STP: per-pay lodgements, error resolution, end-of-year finalisation to ATO.
- Reporting: payroll summaries, W1/W2 tie-outs, leave and labour-cost dashboards.
Need a broader setup? Combine with bookkeeping for freelancers or tax support for freelancers so payroll ties neatly into BAS and year-end.
Best next steps
Write down who you pay, how often, and any deadlines (overdue super, missed STP, onboarding new staff, switching software). That becomes the basis for a clear, fixed-scope quote.
If you’re still comparing options, use the payroll services pillar for a broader view, then drill into the freelancer pages linked here to see how the work looks in your context.
When ready, send a short brief and request setup plus the next two pay cycles so you can assess quality, speed and communication.
Frequently asked questions
Do freelancers need payroll?
Sole traders don’t payroll their own drawings. Payroll applies if you hire staff or have contractors entitled to super. Companies and trusts usually run payroll for owners and employees and must lodge STP.
What do I need to set up payroll correctly?
PAYG withholding registration, STP-enabled software, super clearing house access, TFN and super choice forms, and any award classifications or pay rules that apply. Many freelancers also set up timesheets and approvals to streamline pay runs.
How often do I pay super and lodge STP?
Super is generally due quarterly by the 28th after quarter end (SG 11.5% from 1 July 2024). STP must be lodged on or before each payday. EOFY STP finalisation is usually due by 14 July for employees; concessions can apply to closely held payees.
Are contractors ever entitled to super?
Yes. If a contractor is paid mainly for their labour and works personally, super may be required even if they have an ABN. If unsure, get an assessment before you process pay.
What if a supplier doesn’t provide an ABN?
Where no ABN is quoted and no exemption applies, you may have to withhold 47% and report it. This is separate from paying employees via payroll.
Can I run payroll monthly?
Yes, provided you meet STP timing and award/fair work requirements and pay super by the due dates. Many freelancer businesses choose monthly or fortnightly cycles.